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Cancer Type-Centric Fusions Results

Cancer Type: Tier:

Tumor type can be selected from twelve tumor types.

Cancer	TCGA SampleId	FusionPair	E-value	Tier	Frame	phosphorylation	ubiquitination	WGS
SKCM	TCGA.BF.AAP6.01A	ABCA1::ZNF483	0.39	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.DA.A1HW.06A	ABCC4::PTPN4	0.18	tier1	In-frame	A1 : B0	A1 : B0	validated
SKCM	TCGA.FS.A1ZQ.06A	ABCC5::SPRR4	100.0	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A82C.01A	ABI1::CUBN	1.6	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EE.A181.06A	AC006465.3::C6orf174	0.25	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3CF.06A	AC008073.6::SNTG2	1.1	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D9.A1JX.06A	AC020907.3::LGI4	1.4	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.D9.A3Z4.01A	AC020907.3::LGI4	1.4	tier3	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MK.06A	AC020907.3::LGI4	1.4	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1YX.06A	AC020907.3::LGI4	1.4	tier3	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1Z4.06A	AC020907.3::LGI4	1.4	tier3	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.LH.A9QB.06A	AC020907.3::LGI4	1.4	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.YD.A9TB.06A	AC020907.3::LGI4	1.4	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.FW.A3I3.06A	AC087465.1::NRG4	0.003	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.DA.A3F5.06A	AC087465.1::PSTPIP1	0.22	tier1	In-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.D9.A1JX.06A	AC090098.1::TRPM1	0.8	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.EE.A2GH.06A	AC113191.1::C21orf56	1.9	tier3	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2GH.06A	AC113191.1::LSS	0.083	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.BF.AAP6.01A	ACACB::UNG	0.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A44O.01A	ACACB::UNG	0.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1YY.06A	ACACB::UNG	0.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A5KH.06A	ACO2::AHRR	0.57	tier2	Out-of-frame	A1 : B1	A0 : B0	NA
SKCM	TCGA.BF.A5EQ.01A	ACO2::C22orf25	2.8	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.XV.AAZY.01A	ACO2::RASGEF1C	0.24	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A550.01A	ACP5::GTF2F1	0.55	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
SKCM	TCGA.GN.A268.06A	ACTN4::EIF3K	0.18	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
SKCM	TCGA.EB.A44Q.06A	ADAMTS12::RAI14	0.46	tier1	In-frame	A1 : B1	A0 : B0	NA
SKCM	TCGA.GN.A26A.06A	ADAMTS17::AKAP13	100.0	tier1	In-frame	A0 : B0	A0 : B0	validated
SKCM	TCGA.ER.A19C.06A	ADAMTS17::NCF4	1.3	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.ER.A3ET.06A	ADAMTS7::TMEM135	0.22	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FR.A7U9.06A	ADAMTSL1::WNT5B	0.66	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19W.06A	ADCK5::HSF1	0.52	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A4F4.06A	ADCY2::CLPTM1L	0.58	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.BF.AAP6.01A	ADCY2::PARP8	0.48	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A196.01A	ADNP::BMP7	3.1	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A4F4.06A	ADRBK2::EP300	0.98	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
SKCM	TCGA.FS.A1ZD.06A	ADSS::BPNT1	100.0	tier1	CDS-5UTR	A1 : B0	A0 : B0	non-validated
SKCM	TCGA.D3.A3CC.06A	AEBP2::PRLR	0.12	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A193.06A	AEBP2::ST8SIA1	3.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.DA.A1IA.06A	AGK::BRAF	1.2	tier3	In-frame	A0 : B0	A1 : B0	NA
SKCM	TCGA.EB.A82C.01A	AHDC1::CACHD1	1.2	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A82B.01A	AHDC1::DNAJC8	0.097	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.BF.A1Q0.01A	AHI1::C12orf50	0.24	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2GT.06A	AHNAK::BIRC6	0.87	tier4	3UTR-CDS	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.FS.A1ZZ.06A	AHR::CUL4B	0.31	tier1	CDS-5UTR	A1 : B0	A1 : B0	NA
SKCM	TCGA.D3.A1Q3.06A	AHRR::CSNK1E	0.56	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.3N.A9WC.06A	AIF1L::NRSN2	0.021	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A4P0.01A	AIF1L::SYN2	0.089	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A181.06A	AKAP6::PRKD1	0.027	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1Z0.06A	AKAP7::C6orf103	0.046	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A20B.06A	AKAP8L::WIZ	0.51	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2GL.06A	AKT2::ELK3	0.79	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A197.06A	AKT3::PTPRR	0.18	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A44R.06A	ALG6::SLC22A15	2.0	tier2	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.Z2.AA3S.06A	ALK::STK39	3.0	tier1	In-frame	A1 : B1	A0 : B0	NA
SKCM	TCGA.W3.A825.06A	ALPK1::NAA15	0.028	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3MO.06A	AMBRA1::HARBI1	1.3	tier1	5UTR-5UTR	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.FS.A1ZQ.06A	AMBRA1::LRP4	0.44	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.QB.AA9O.06A	ANAPC5::ADAM15	3.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A26D.06A	ANKH::ANO6	0.5	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FR.A3YO.06A	ANKRD11::BRMS1	0.039	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZK.06A	ANKRD11::CPNE7	0.25	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.FW.A3I3.06A	ANKRD27::RNF38	0.24	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZF.06A	ANKRD28::TM9SF4	3.3	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A5SH.06A	ANKS1A::MYO1F	0.023	tier2	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A5SH.06A	ANO1::KIF21A	1.1	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2JN.06A	AP2A1::VRK3	0.075	tier3	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZA.06A	AP2A2::TOLLIP	0.6	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.D3.A51N.06A	AP3B1::IPO11	0.26	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.GN.A26D.06A	AP3B1::LHFPL2	1.1	tier1	CDS-5UTR	A1 : B0	A1 : B0	NA
SKCM	TCGA.RP.A695.06A	APBA2::SOAT2	0.92	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A196.01A	APBB1IP::DNAJC1	0.73	tier1	In-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.ER.A195.06A	APC::C5orf13	1.0	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.BF.AAP6.01A	APC::SLC27A6	0.03	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A4FB.06A	API5::GANC	0.014	tier2	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A1QB.06A	APOC1::RABEP1	0.086	tier4	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A42L.06A	APP::CCT8	0.89	tier1	In-frame	A0 : B0	A0 : B1	NA
SKCM	TCGA.FS.A1ZK.06A	APPBP2::CA10	0.78	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
SKCM	TCGA.ER.A3EV.06A	ARAP1::DYNC2H1	0.23	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A4F4.06A	ARFGAP3::FBLN1	1.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.GF.A6C9.06A	ARHGAP5::LSAMP	0.014	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A1NK.01A	ARHGDIA::SQSTM1	0.22	tier1	3UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A182.06A	ARHGEF11::PLEKHA6	0.1	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.ER.A197.06A	ARID1B::SAMD5	0.042	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.ER.A197.06A	ARID1B::SASH1	0.19	tier3	In-frame	A1 : B1	A0 : B0	NA
SKCM	TCGA.DA.A95Y.06A	ARID2::C12orf56	0.19	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.BF.A1PV.01A	ARID2::SCAF11	0.13	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.QB.AA9O.06A	ARID4B::IGFN1	0.06	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
SKCM	TCGA.ER.A197.06A	ARID4B::SCCPDH	0.54	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A57M.01A	ARRB1::CCDC90B	0.48	tier2	Out-of-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.FS.A1Z4.06A	ARRB1::GDPD5	0.14	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.YG.AA3P.06A	ARRB1::PAK1	1.5	tier1	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2GR.06A	ARRB1::PRCP	0.37	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19E.06A	ARV1::CAPN9	1.4	tier2	Out-of-frame	A0 : B0	A0 : B0	validated
SKCM	TCGA.FS.A1ZE.06A	ASAP1::CDKN2B	0.83	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EE.A17Z.06A	ASB1::SH3BP4	4.6	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A29A.06A	ASTN2::PALM2-AKAP2	0.1	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZJ.06A	ATAD5::PSMA1	0.34	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.BF.A5EP.01A	ATG7::BRAF	0.44	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.BF.A1Q0.01A	ATL3::ZDHHC14	0.54	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
SKCM	TCGA.HR.A2OH.01A	ATP10D::FAM133A	2.8	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.HR.A2OH.06A	ATP10D::FAM133A	2.8	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MF.06A	ATP5L::AHCYL2	3.4	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.YG.AA3P.06A	ATP6V0A1::STAT5B	0.75	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A3Y7.01A	ATP6V0D1::DUS2L	0.42	tier1	Out-of-frame	A0 : B0	A1 : B0	NA
SKCM	TCGA.ER.A3ES.06A	ATRX::MAGT1	0.46	tier3	Out-of-frame	A1 : B0	A0 : B0	non-validated
SKCM	TCGA.FS.A1ZZ.06A	ATXN7::SLC25A26	0.29	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.ER.A2NE.06A	AVIL::TRHDE	2.1	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A195.06A	AXIN2::EIF2AK2	1.5	tier3	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.BF.A1PX.01A	AZIN1::ATP6V1C1	3.3	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.FR.A2OS.01A	AZIN1::RNF19A	0.21	tier1	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A198.06A	B2M::PPP4R1	1.7	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19T.01A	B3GALTL::C13orf26	0.064	tier1	In-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.FR.A2OS.01A	BAALC::UBR5	0.007	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A1A1.06A	BANP::JPH3	0.099	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A3ES.06A	BAP1::PBRM1	0.3	tier1	In-frame	A0 : B1	A0 : B1	validated
SKCM	TCGA.D3.A2J8.06A	BBX::KPNA4	0.067	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.WE.A8ZX.06A	BBX::SLC38A1	1.1	tier2	5UTR-CDS	A0 : B0	A0 : B1	NA
SKCM	TCGA.EE.A20I.06A	BBX::TBC1D23	0.008	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
SKCM	TCGA.GN.A26D.06A	BCAP31::HMGB3	0.8	tier1	CDS-5UTR	A0 : B0	A1 : B0	NA
SKCM	TCGA.EE.A2A5.06A	BGN::RABEP1	1.6	tier4	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A3EV.06A	BIRC6::SPAST	0.068	tier1	In-frame	A1 : B0	A1 : B0	NA
SKCM	TCGA.EE.A2GK.06A	BIRC7::ZNF200	0.16	tier1	3UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19W.06A	BPTF::NOL11	0.29	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
SKCM	TCGA.DA.A1IA.06A	BRAF::AGK	1.2	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.BF.A5EP.01A	BRAF::ATG7	0.44	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.BF.A5EP.01A	BRAF::HIBADH	0.17	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A5SH.06A	BTBD9::DNAH8	0.36	tier1	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A4P0.01A	C10orf88::PPAPDC1A	0.47	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3CC.06A	C12orf35::A2ML1	1.2	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A1Q1.06A	C12orf44::CSRNP2	2.8	tier1	5UTR-5UTR	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.ER.A19W.06A	C12orf76::IFT81	0.24	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D9.A4Z5.01A	C14orf126::CGRRF1	0.54	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19C.06A	C15orf41::RAC2	0.13	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZK.06A	C17orf63::CRLF3	0.01	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.W3.A828.06A	C17orf70::NPLOC4	0.7	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D9.A6E9.06A	C17orf85::ATP2A3	0.19	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A4IQ.01A	C19orf2::ZNF383	0.043	tier2	5UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2JG.06A	C19orf22::NLRP1	0.1	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A1Q3.06A	C19orf28::CLASP2	2.1	tier3	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A82C.01A	C1orf213::PTCH2	0.39	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A3ET.06A	C1orf87::FGGY	0.51	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A3AG.06A	C20orf112::EFCAB8	0.002	tier2	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A3Y6.01A	C22orf28::FAM83F	0.52	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.XV.A9W5.01A	C2CD3::PC	1.1	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
SKCM	TCGA.EB.A3XC.01A	C2orf43::RTN4	0.49	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2M5.06A	C3orf38::RP11-159G9.5	0.45	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.ER.A2NB.01A	C3orf67::FHIT	2.9	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZJ.06A	C3orf72::PROS1	0.011	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.W3.A825.06A	C4orf45::MARCH1	0.25	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A1Q3.06A	C5orf42::SEMA5A	0.11	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A44Q.06A	C6orf57::SH3BGRL2	0.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2GP.06A	C6orf62::MRS2	1.7	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.BF.AAP1.01A	C7orf30::GPNMB	3.8	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.DA.A95V.06A	C7orf57::C7orf10	0.45	tier2	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A1Q4.06A	C8orf38::LRRCC1	1.4	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19S.06A	C9orf25::NLGN1	1.1	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.Z2.A8RT.06A	C9orf3::TBC1D9	0.56	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A3J8.06A	C9orf80::SNX30	0.13	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A8LN.01A	CABIN1::POLR2F	0.56	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MR.06A	CACNA1C::DERA	0.018	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19T.01A	CACNA2D2::THRSP	0.23	tier1	CDS-3UTR	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.D3.A2JG.06A	CADPS::FAM19A1	4.8	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2A6.06A	CALD1::AKR1B10	0.26	tier2	Out-of-frame	A1 : B1	A0 : B0	NA
SKCM	TCGA.FS.A1ZU.06A	CALD1::SLC41A1	0.23	tier1	CDS-5UTR	A1 : B0	A0 : B0	non-validated
SKCM	TCGA.FS.A1ZC.06A	CAP1::MACF1	0.74	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.YG.AA3P.06A	CAPN5::XRRA1	3.1	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3CC.06A	CAPRIN2::R3HDM2	0.057	tier1	In-frame	A1 : B1	A0 : B0	NA
SKCM	TCGA.WE.A8K4.01A	CASP8::CFLAR	0.038	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.W3.A828.06A	CAT::TRIM44	0.91	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.Z2.AA3V.06A	CBFA2T3::ACSF3	0.045	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A2NF.01A	CBR4::GALNTL6	1.7	tier1	In-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.EB.A5UM.01A	CCDC167::RRP7A	1.0	tier1	Out-of-frame	A0 : B0	A0 : B1	NA
SKCM	TCGA.FR.A7U8.06A	CCDC50::OSTN	0.077	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19E.06A	CCDC75::DYM	0.39	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
SKCM	TCGA.EE.A29G.06A	CCT3::FAR1	1.6	tier3	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MD.06A	CCT3::SQSTM1	0.79	tier3	3UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A5SH.06A	CD2AP::FKBP5	0.034	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZD.06A	CD55::CENPL	0.066	tier1	CDS-5UTR	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.D9.A1JW.06A	CD55::NEK2	0.005	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19T.01A	CD55::PLD5	0.27	tier1	In-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.FS.A1YY.06A	CD81::DNM1L	3.0	tier4	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2JG.06A	CDC25A::RBM6	1.9	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZU.06A	CDC27::BRAF	0.51	tier1	In-frame	A0 : B0	A0 : B0	validated
SKCM	TCGA.GN.A4U5.01A	CDC37L1::BNC2	0.017	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FW.A5DX.01A	CDC42BPB::RGS6	0.061	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.WE.A8K4.01A	CDC5L::MLIP	0.031	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MN.06A	CDH11::KIFC3	2.9	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.3N.A9WC.06A	CDK13::C7orf36	0.071	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A20I.06A	CDK14::TFEC	0.1	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2J6.06A	CDK18::CNTN2	0.094	tier2	5UTR-CDS	A0 : B1	A0 : B0	NA
SKCM	TCGA.EE.A2ML.06A	CDK2::UBE3A	5.1	tier4	3UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A2NH.06A	CDKL3::SIL1	0.51	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A3JI.06A	CDYL::EEF1E1	0.003	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.EE.A29V.06A	CELSR1::C10orf93	0.28	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2JO.06A	CELSR1::KIAA1644	0.23	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A8LL.06A	CENPM::AGR3	0.32	tier2	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZP.06A	CEP112::WIPF2	0.27	tier2	CDS-5UTR	A0 : B0	A0 : B0	validated
SKCM	TCGA.FS.A1ZD.06A	CEP170::AKT3	0.36	tier1	In-frame	A0 : B0	A0 : B0	validated
SKCM	TCGA.YG.AA3P.06A	CEP85::RBFOX1	0.57	tier3	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A20I.06A	CHCHD3::MKLN1	0.18	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A5UL.06A	CHCHD6::MYO1A	0.52	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZJ.06A	CHCHD6::UBA5	1.8	tier1	In-frame	A0 : B1	A0 : B1	NA
SKCM	TCGA.ER.A197.06A	CHD2::ACSBG1	0.18	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A197.06A	CHD2::ZNF880	2.7	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A5SH.06A	CHERP::HSH2D	0.028	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZK.06A	CHIC2::SIPA1L3	0.028	tier1	CDS-5UTR	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.D9.A3Z3.06A	CHKA::NADSYN1	3.0	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.WE.A8ZN.06A	CHKA::PAK1	0.34	tier2	Out-of-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.EB.A82B.01A	CHKA::SHANK2	0.81	tier2	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2A6.06A	CKAP5::DAAM1	0.42	tier1	In-frame	A0 : B0	A1 : B0	NA
SKCM	TCGA.ER.A19L.06A	CLCN6::RAF1	0.66	tier1	In-frame	A1 : B0	A0 : B0	validated
SKCM	TCGA.W3.AA1V.06B	CLCN7::IFT140	0.005	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A26D.06A	CLCN7::SEC63	0.28	tier3	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.Z2.A8RT.06A	CLINT1::UCHL3	0.51	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
SKCM	TCGA.D3.A51H.06A	CLIP1::RSRC2	0.039	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A29L.06A	CLIP2::RORB	0.2	tier2	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3CF.06A	CLIP4::TMEM18	0.12	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19W.06A	CLMN::SOS2	0.1	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D9.A1X3.01A	CLNK::WDR70	2.1	tier3	Out-of-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.D9.A1X3.06A	CLNK::WDR70	2.1	tier2	Out-of-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.EE.A20F.06A	CLPTM1L::VARS	0.11	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A42H.01A	CMTM7::CLDN11	0.55	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.W3.AA1R.06A	CMTM8::RPN1	0.33	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D9.A4Z5.01A	CNIH2::MS4A4A	100.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A551.01A	CNN3::CACHD1	0.12	tier2	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A44Q.06A	CNOT2::FBXO4	0.29	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A197.06A	CNST::LNX1	0.2	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2GR.06A	CNTN5::ME3	0.15	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.DA.A3F3.06A	COL4A3BP::ELOVL7	0.019	tier1	CDS-5UTR	A0 : B0	A0 : B0	validated
SKCM	TCGA.FS.A1ZK.06A	COMMD9::CD59	100.0	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
SKCM	TCGA.EE.A184.06A	COMT::ZDHHC11	0.018	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19E.06A	CORO2A::C9orf3	0.59	tier3	In-frame	A1 : B0	A0 : B0	non-validated
SKCM	TCGA.YD.A89C.06A	CORO2B::SLC22A23	3.0	tier2	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A3HV.01A	CORO6::SLC20A2	0.097	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.RP.A695.06A	COX7C::PLEKHA5	0.36	tier4	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.WE.A8ZM.06A	CPEB1::CRTC3	0.59	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19G.06A	CPSF6::NUP107	0.25	tier1	3UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.YG.AA3O.06A	CREB5::JAZF1	0.078	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.ER.A42K.06A	CREBBP::C16orf59	0.015	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A4XL.01A	CRISPLD2::MPZL2	1.5	tier1	CDS-3UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A4F4.06A	CRKL::GRAMD4	3.0	tier2	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZJ.06A	CRLF3::CRHR1	0.96	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MS.06A	CRTC3::IQGAP1	0.38	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
SKCM	TCGA.DA.A1I7.06A	CSE1L::ARFGEF2	0.32	tier1	3UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MR.06A	CSK::C15orf27	0.25	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2ME.06A	CSNK1E::PHF5A	0.37	tier1	In-frame	A1 : B1	A0 : B0	NA
SKCM	TCGA.WE.A8ZM.06A	CSNK1G1::MESP1	0.68	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.ER.A3EV.06A	CSPP1::CLVS1	0.17	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A196.01A	CSTF1::BLM	0.39	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.FR.A2OS.01A	CTCF::CES2	1.9	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.DA.A1I0.06A	CTD-2006C1.2::ATCAY	0.78	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.ER.A19M.06A	CTD-2006C1.2::PKN1	1.7	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
SKCM	TCGA.D3.A2J6.06A	CTNNB1::IQCE	3.2	tier4	3UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2JB.06A	CTNND1::PACS1	0.29	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
SKCM	TCGA.D3.A2JC.06A	CTNND2::POLR1A	0.11	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.D3.A51N.06A	CTNND2::PPARGC1B	0.59	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A8GB.06A	CTSF::RANBP3	0.25	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A6QY.01A	CTSS::TDRD10	100.0	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19T.01A	CTTN::CLASP2	0.24	tier4	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.YG.AA3P.06A	CTTN::PPP6R3	0.6	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D9.A4Z5.01A	CYB5A::DCC	0.98	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.DA.A1I1.06A	CYFIP1::ZNFX1	0.52	tier4	3UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.WE.AAA3.06A	CYP7B1::SULF1	0.45	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A42Z.01A	CYTH3::GRID1	0.006	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2A6.06A	DAAM1::C12orf10	0.98	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A8GM.06A	DAAM1::PRKCH	0.21	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EE.A184.06A	DAB2::OXCT1	0.55	tier1	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZG.06A	DAP::SEMA5A	3.4	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1YX.06A	DBP::CA11	1.2	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A6L9.06A	DCAF8::AIG1	0.82	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A3EV.06A	DCAF8::ETV3	0.063	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A8GN.06A	DCAKD::SMAP1	0.072	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.W3.A825.06A	DCHS2::C4orf32	0.25	tier2	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19H.06A	DCLK2::UST	0.64	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.BF.AAP6.01A	DCP2::C8orf34	0.027	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A195.06A	DCPS::TIRAP	1.4	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A1Q9.06A	DCUN1D4::PTPRT	0.046	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19B.06A	DCUN1D4::USP46	0.21	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A430.01A	DDR2::FMO4	3.1	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
SKCM	TCGA.EE.A2MU.06A	DDX17::CPT1B	0.14	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MC.06A	DENND1A::PSMB7	0.61	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A197.06A	DGAT2::TMEM126A	100.0	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZK.06A	DGCR2::GNB1L	0.095	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
SKCM	TCGA.D3.A1Q3.06A	DGCR2::IRX4	0.12	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A5KH.06A	DGCR8::ITGA2	0.36	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZE.06A	DHX35::TOX2	1.1	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A42Z.01A	DHX9::ZBTB37	0.1	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A193.06A	DIP2B::BCAT1	0.73	tier4	Out-of-frame	A1 : B0	A1 : B0	NA
SKCM	TCGA.BF.A1PU.01A	DIP2B::TBC1D15	0.51	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
SKCM	TCGA.BF.AAP2.01A	DIP2C::LARP4B	0.46	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
SKCM	TCGA.FS.A1ZJ.06A	DIP2C::TBX18	0.36	tier2	In-frame	A1 : B1	A0 : B0	NA
SKCM	TCGA.EE.A3AE.06A	DLG4::BBS2	1.5	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.YD.A89C.06A	DNAH14::ARF1	0.28	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19E.06A	DNM1L::BICD1	0.12	tier1	In-frame	A1 : B0	A0 : B0	validated
SKCM	TCGA.WE.A8K1.06A	DNM2::C19orf66	0.12	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A550.01A	DNM2::FDX1L	0.009	tier1	CDS-3UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A550.01A	DNM2::ZGLP1	0.038	tier2	3UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.W3.AA1W.06A	DNMBP::CPN1	0.43	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3C7.06A	DNMT3A::DTNB	0.39	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.WE.A8K4.01A	DOPEY2::CBR3	1.1	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.W3.A825.06A	DPF2::PPP1R10	0.011	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A4IQ.01A	DPY19L3::GPR68	2.1	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A5KH.06A	DPYSL3::IL17B	0.47	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3CC.06A	DROSHA::DNAH5	0.85	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FW.A5DX.01A	DROSHA::TERT	2.7	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.DA.A1I0.06A	DST::MLIP	1.4	tier1	In-frame	A0 : B1	A0 : B0	non-validated
SKCM	TCGA.EB.A97M.01A	DSTYK::BRAF	0.016	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A3Y7.01A	DUS2L::HSD11B2	0.46	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.DA.A1I8.06A	DUSP22::CECR5	0.49	tier1	In-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.ER.A196.01A	DYM::TMC7	1.6	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A29D.06A	DYNC1H1::PPP2R5C	0.015	tier1	Out-of-frame	A1 : B1	A1 : B0	NA
SKCM	TCGA.FS.A4F9.06A	DYX1C1::LSAMP	0.01	tier3	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A42Z.01A	ECE1::FAM183A	0.28	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A42Z.01A	ECE1::PLA2G5	0.017	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A431.01A	EDEM2::UQCC	1.1	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A20F.06A	EEF1G::NXF1	0.56	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A29L.06A	EFHA2::TGFBR3	0.075	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A550.01A	EHD4::GPR176	0.053	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.DA.A95Y.06A	EIF2AK3::NBAS	0.35	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19H.06A	EIF3D::IQCE	0.004	tier3	3UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.BF.A3DJ.01A	EIF4G1::AEBP1	100.0	tier3	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A26D.06A	EIF4G2::ARFGEF2	4.4	tier3	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZN.01A	ELOVL5::HMGCLL1	0.28	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.FR.A7U8.06A	ENAH::LIN9	0.021	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.W3.A824.06A	ENAH::SCCPDH	0.18	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A26D.06A	ENDOD1::RAB30	0.14	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2ME.06A	ENTHD1::RNF212	0.22	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZP.06A	ENTPD5::OLFM2	1.3	tier3	In-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.FS.A4F4.06A	EP300::FBLN1	1.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A4XL.01A	EPB41::ITPR1	0.18	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A5UN.06A	EPC1::DIP2C	0.33	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
SKCM	TCGA.EB.A551.01A	EPRS::USH2A	0.081	tier2	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A82C.01A	EPS15::C1orf159	0.14	tier1	CDS-5UTR	A1 : B0	A1 : B0	NA
SKCM	TCGA.ER.A19M.06A	EPS15L1::ZNF568	0.12	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A1Q5.06A	ERBB2IP::ARL15	0.77	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.D3.A2JH.06A	ERBB2IP::TMEM232	0.26	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A1Q1.06A	ERBB3::RPL30	0.068	tier2	NA	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.D3.A1Q9.06A	ERC1::METTL4	0.1	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MS.06A	ERGIC1::GPR98	0.78	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A2NE.06A	ERICH1::CTD-2021H9.3	100.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A2NE.06A	ERICH1::PTPRR	0.033	tier1	In-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.GN.A4U3.06A	ESRRA::C11orf20	0.26	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.W3.AA1V.06B	ETV6::ITLN1	0.092	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A51B.01A	ETV6::NTRK3	5.5	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A3EV.06A	EXOC2::MDGA1	0.49	tier3	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZJ.06A	EXOC6B::CASP10	0.1	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A194.01A	EXT2::ALKBH3	2.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.WE.A8ZT.06A	FAM100B::FMN1	0.016	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19E.06A	FAM102A::PHF19	0.18	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.D9.A4Z5.01A	FAM102B::TRAPPC8	0.1	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.YG.AA3P.06A	FAM104A::ACLY	5.4	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A26A.06A	FAM108C1::SCAPER	0.45	tier2	CDS-5UTR	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.FS.A4F4.06A	FAM109B::RAI14	1.5	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A51N.06A	FAM114A2::FBN2	0.042	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19E.06A	FAM125B::MAMDC2	0.18	tier1	In-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.EB.A24D.01A	FAM125B::TG	0.034	tier1	In-frame	A0 : B0	A0 : B0	validated
SKCM	TCGA.D9.A4Z6.01A	FAM126A::TRA2A	1.4	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.D9.A4Z6.06A	FAM126A::TRA2A	1.4	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.D3.A8GC.06A	FAM129B::SNRNP25	0.022	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZG.06A	FAM134B::ANKH	0.27	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3CF.06A	FAM134B::SNTG2	0.76	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19T.01A	FAM168A::PXDNL	0.36	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.ER.A19T.06A	FAM168A::PXDNL	0.36	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.RP.A6K9.06A	FAM190A::MMRN1	1.1	tier3	5UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19E.06A	FAM19A4::UBA3	0.05	tier2	Out-of-frame	A0 : B0	A0 : B0	validated
SKCM	TCGA.D9.A4Z5.01A	FAM19A5::C14orf49	0.007	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.BF.A5EQ.01A	FAM19A5::ZFP2	0.065	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.Z2.AA3V.06A	FAM38A::CBFA2T3	0.097	tier4	In-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.EE.A2GB.06A	FAM59A::PTPRM	0.11	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.WE.A8K1.06A	FARS2::CDYL	2.7	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2J9.06A	FARS2::LYRM4	0.028	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19H.06A	FASN::LOXL4	0.007	tier4	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A20I.06A	FBL::CTC-435M10.3	0.28	tier3	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19T.01A	FBL::RASGRP4	0.47	tier1	Out-of-frame	A1 : B0	A0 : B0	non-validated
SKCM	TCGA.ER.A19T.01A	FBL::RYR1	0.63	tier1	Out-of-frame	A1 : B0	A0 : B0	non-validated
SKCM	TCGA.EB.A82C.01A	FBXL17::TMEM232	0.16	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D9.A6EC.06A	FBXL7::AGXT2	1.3	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3CF.06A	FBXL7::FOSL2	0.31	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FW.A3I3.06A	FBXO33::SERINC5	3.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A51N.06A	FBXO38::SKIV2L2	2.3	tier2	5UTR-CDS	A0 : B1	A0 : B0	NA
SKCM	TCGA.D3.A8GN.06A	FBXW11::RBM11	1.1	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.XV.AAZY.01A	FCHO2::SLC25A17	0.01	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19T.01A	FCHSD2::ATP6V1H	1.3	tier1	In-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.ER.A19T.06A	FCHSD2::ATP6V1H	1.3	tier1	In-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.ER.A19W.06A	FCHSD2::TPCN2	0.76	tier1	In-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.EB.A82B.01A	FEN1::GDPD4	0.72	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A82C.01A	FER::FBXL17	2.2	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A20I.06A	FGD4::BICD1	0.018	tier1	CDS-3UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A431.01A	FGFR1OP::ABCC4	0.81	tier1	In-frame	A1 : B0	A0 : B1	NA
SKCM	TCGA.EE.A2MM.06A	FGFR1OP2::TEC	1.3	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1Z0.06A	FIG4::PPP1R14C	0.23	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A5GL.06A	FMN1::AVEN	0.058	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.WE.A8ZT.06A	FMN1::FAM100B	0.7	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1Z4.06A	FMN1::KIAA1267	0.67	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A264.06A	FMNL3::CPNE8	1.4	tier1	Out-of-frame	A1 : B0	A0 : B0	validated
SKCM	TCGA.EB.A5UL.06A	FNDC3B::PGM5	0.94	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A5UL.06A	FNDC3B::SUCNR1	1.4	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A44R.06A	FOXK1::THSD7A	0.008	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.3N.A9WC.06A	FOXK2::MS4A12	2.6	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A194.01A	FOXN3::RP11-944C7.1	1.4	tier1	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A184.06A	FREM2::SNAP29	0.19	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A196.01A	FRMD4A::APBB1IP	0.68	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MS.06A	FRMD4A::PLXDC2	0.74	tier2	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.WE.A8ZR.06A	FRMD4B::ABCA5	0.012	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.GN.A26D.06A	FRS2::TBC1D30	0.52	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
SKCM	TCGA.YD.A9TA.06A	FZD6::SDCCAG8	4.2	tier1	In-frame	A1 : B1	A0 : B0	NA
SKCM	TCGA.GN.A8LN.01A	FZR1::C19orf28	0.084	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A51N.06A	G3BP1::PDE4D	0.071	tier1	In-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.ER.A19T.01A	GAB2::FGF7	0.34	tier1	CDS-5UTR	A1 : B0	A0 : B0	non-validated
SKCM	TCGA.ER.A19T.06A	GAB2::FGF7	0.34	tier1	Out-of-frame	A1 : B0	A0 : B0	non-validated
SKCM	TCGA.EB.A5SH.06A	GAB2::NUDC	1.4	tier1	In-frame	A1 : B1	A0 : B0	NA
SKCM	TCGA.YG.AA3P.06A	GAB2::PTPRT	0.8	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A6L9.06A	GAB2::RP11-111M22.2	0.096	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19T.06A	GAB2::TRIP12	0.41	tier3	3UTR-CDS	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.EB.A44Q.06A	GABPB1::C15orf52	2.0	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A26D.06A	GABRA3::SARNP	1.6	tier1	CDS-3UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.BF.A5EP.01A	GALNT11::LMBR1	5.8	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A51E.06A	GALNT2::RGS7	1.4	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A4OY.01A	GALNTL4::PRDM2	0.71	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A3AG.06A	GAPDH::HSPB1	0.73	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.3N.A9WB.06A	GARS::HOXA13	0.41	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A8LL.06A	GDPD5::SERPINH1	0.041	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.BF.AAP2.01A	GFOD1::EYS	0.95	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A264.06A	GFOD2::TRIO	0.24	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.GN.A266.06A	GFPT1::NFU1	0.13	tier1	In-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.FW.A3TV.06A	GIT2::SMYD5	1.8	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A44R.06A	GLCCI1::DGKB	0.008	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.WE.A8K1.06A	GLE1::SLC27A4	0.33	tier1	Out-of-frame	A0 : B0	A1 : B0	NA
SKCM	TCGA.WE.A8ZT.06A	GMDS::FARS2	1.4	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2J6.06A	GNB2L1::DECR1	0.32	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MT.06A	GNB2L1::HLTF	0.27	tier3	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.BF.AAP1.01A	GNE::BICC1	1.0	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A42Z.01A	GNG7::PLA2G2A	0.51	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A85J.01A	GOLGA5::RIN3	0.12	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.W3.A828.06A	GOLIM4::MECOM	3.1	tier1	In-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.FS.A1Z4.06A	GON4L::MED27	0.009	tier3	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A82B.01A	GOT2::MMP2	3.9	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FW.A3I3.06A	GPHN::PRKCH	0.045	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
SKCM	TCGA.EE.A20I.06A	GPR158::KIAA1217	0.013	tier1	In-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.FS.A1ZQ.06A	GPR180::GPC6	0.043	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZK.06A	GRAP2::BRD1	2.2	tier1	In-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.D9.A1JW.06A	GRB2::VMP1	1.0	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2M7.06A	GRIA1::RAD17	0.64	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.ER.A19L.06A	GRID1::CXCL12	0.21	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.EB.A42Z.01A	GRID1::HECTD2	100.0	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2JP.06A	GRIK2::GPC1	2.3	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A197.06A	GRIK2::MANEA	2.8	tier3	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2GM.06B	GSTP1::ARFGEF2	1.1	tier3	3UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A1NK.01A	GSTP1::SF3B2	1.3	tier4	3UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A550.01A	GTF2F1::ACP5	0.55	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3C1.06A	GTF2H3::NCOR2	0.24	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.GN.A265.06A	GTF3C5::PHF2	0.039	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MR.06A	GTPBP2::USP49	0.48	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2JE.06A	GTPBP3::RBM42	0.043	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A2NC.06A	GTSE1::TTC38	0.29	tier3	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A44R.06A	GXYLT2::NEK3	1.3	tier2	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2JG.06A	GXYLT2::PRICKLE2	0.97	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A431.01A	HCFC1::MRFAP1	0.053	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A1Q3.06A	HCN1::SPEF2	0.33	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A264.06A	HDAC4::PDE11A	0.12	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.DA.A1HW.06A	HDAC9::LINGO2	0.51	tier1	CDS-5UTR	A1 : B0	A0 : B0	non-validated
SKCM	TCGA.FS.A1ZE.06A	HDLBP::EEA1	2.2	tier3	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A44R.06A	HEATR2::BRAT1	0.1	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A3AG.06A	HEATR5B::NCALD	3.3	tier3	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.RP.A695.06A	HERC2::IGFBP6	0.052	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.BF.A5EP.01A	HIBADH::BRAF	0.17	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3C1.06A	HIPK2::ARPC1A	0.26	tier1	In-frame	A0 : B0	A0 : B1	NA
SKCM	TCGA.FS.A1ZT.06A	HIST1H2AC::TNFRSF21	0.72	tier1	3UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2GL.06A	HIVEP3::C1orf168	1.4	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A42Z.01A	HIVEP3::DOT1L	0.077	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2GD.06A	HLA-A::KIFC3	0.78	tier3	3UTR-CDS	A0 : B1	A0 : B0	NA
SKCM	TCGA.ER.A1A1.06A	HLA-DPA1::TRIP12	0.39	tier4	3UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A44Q.06A	HLA-DRA::EEA1	0.45	tier3	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A29T.06A	HLA-DRA::SNW1	0.34	tier4	3UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2J8.06A	HMGA1::EEA1	0.76	tier3	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A26D.06A	HMGA2::GABRA3	0.31	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A5KH.06A	HMGXB3::PAM	0.024	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.W3.AA1R.06A	HMGXB4::MGMT	0.88	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.BF.A5EQ.01A	HNRNPAB::SAMM50	0.38	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZJ.06A	HOXA3::PARP8	0.02	tier1	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A2NE.06A	HOXB6::EPHA5	0.29	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.XV.A9W2.01A	HPS4::UBE2L3	0.48	tier1	In-frame	A0 : B0	A0 : B1	NA
SKCM	TCGA.D9.A6EA.06A	HS6ST3::EFNA5	3.8	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3BZ.06A	IFT81::GLIPR1L2	0.29	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A29G.06A	IGF2R::QKI	3.1	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A2NG.06A	IL12RB2::SDC3	0.92	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D9.A4Z5.01A	IL17D::IFT88	0.26	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FR.A44A.06A	IL17RC::TTLL3	0.13	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.DA.A3F5.06A	IL27RA::RLN3	0.019	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.BF.A1Q0.01A	IL4R::NSMCE1	1.6	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3CC.06A	ING4::A2ML1	0.008	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2J6.06A	INPP5A::LRRC27	0.86	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZD.06A	INPP5F::GRK5	0.47	tier1	In-frame	A0 : B0	A0 : B0	validated
SKCM	TCGA.FR.A7U8.06A	INTS4::ALG8	100.0	tier2	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A181.06A	INTS8::ESRP1	0.051	tier1	CDS-3UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.WE.A8K5.06A	IPO7::CTR9	0.083	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.DA.A95X.06A	IPO7::TMEM41B	0.25	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.QB.AA9O.06A	IPO9::S100A13	0.13	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.GN.A262.06A	IREB2::DIAPH3	1.1	tier1	In-frame	A0 : B0	A1 : B0	validated
SKCM	TCGA.BF.AAP6.01A	IRX1::ADAMTS16	4.0	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.DA.A3F5.06A	ISL2::AC087465.1	0.77	tier2	CDS-5UTR	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.BF.AAP4.01A	ITCH::JMJD4	0.17	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2J6.06A	ITCH::RALY	5.0	tier1	CDS-5UTR	A1 : B0	A1 : B0	NA
SKCM	TCGA.EE.A29P.06A	ITPK1::CTD-2014B16.3	1.1	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3CF.06A	ITSN2::KIDINS220	0.47	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3CF.06A	ITSN2::MYO10	0.15	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
SKCM	TCGA.D3.A51H.06A	JAK2::CTD-2021H9.3	0.36	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.WE.A8ZN.06A	JAK2::DOCK8	0.4	tier4	In-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.ER.A3EV.06A	JARID2::NEDD9	0.27	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.YG.AA3O.06A	JAZF1::CREB5	0.078	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A5GR.06A	KATNAL1::CUL4A	0.082	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A6QY.01A	KCNQ5::ALK	0.035	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.FW.A3I3.06A	KCTD15::MSI2	0.11	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2JE.06A	KDM4B::FOXA3	1.4	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A44O.01A	KDM4B::SLC25A42	0.62	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A1Q9.06A	KDM5A::IQSEC3	0.78	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A3J5.06A	KDM5B::RASAL2	0.02	tier2	In-frame	A1 : B1	A1 : B0	non-validated
SKCM	TCGA.EE.A2MR.06A	KHDRBS3::ANXA13	100.0	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A2ND.06A	KHDRBS3::PACRG	100.0	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A180.06A	KIAA0146::PIAS1	1.5	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MS.06A	KIAA0317::DPEP1	4.1	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A184.06A	KIAA0564::RICTOR	0.2	tier2	5UTR-CDS	A0 : B1	A0 : B1	NA
SKCM	TCGA.FS.A1ZE.06A	KIAA0889::RALY	0.022	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A20I.06A	KIAA1217::C10orf67	0.22	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FR.A8YC.06A	KIAA1267::AARS	0.18	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19T.06A	KIAA1468::NFATC1	0.023	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.FS.A1ZE.06A	KIAA1755::C20orf152	1.6	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.WE.A8ZT.06A	KIAA1797::C3orf78	0.38	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.QB.AA9O.06A	KIAA1797::IFT74	0.011	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A3AH.06A	KIFAP3::COPA	0.2	tier2	In-frame	A0 : B1	A0 : B1	NA
SKCM	TCGA.FR.A3YN.06A	KIRREL::CD48	0.003	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.DA.A1IA.06A	KIRREL::DDR2	0.22	tier3	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZG.06A	KIT::FAR1	0.088	tier3	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A44O.01A	KIT::UGT2B7	0.35	tier1	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A2NH.06A	KLF7::PARD3B	0.2	tier1	In-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.EB.A1NK.01A	KRT10::ARFGEF2	0.67	tier4	3UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A24C.01A	KRT10::CLASP2	0.16	tier4	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A5KH.06A	L3MBTL2::EFCAB6	0.047	tier1	In-frame	A1 : B1	A0 : B0	NA
SKCM	TCGA.WE.AAA3.06A	LACTB2::CYP7B1	1.4	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1Z4.06A	LARP4::TMBIM6	0.061	tier1	In-frame	A0 : B0	A1 : B0	NA
SKCM	TCGA.FS.A4F4.06A	LARP4B::PAMR1	0.18	tier2	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3CF.06A	LBH::FLT4	0.05	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A550.01A	LCLAT1::EPHA3	0.086	tier2	In-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.EE.A2GJ.06A	LCP2::SLC34A1	0.43	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.WE.A8ZT.06A	LDLR::DNM2	0.087	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A4F4.06A	LDLRAD3::PHF21A	0.023	tier3	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.FR.A726.01A	LDLRAD3::TRIM44	0.12	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A8LL.06A	LDLRAD3::VWA5B2	0.046	tier1	In-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.FS.A4F4.06A	LGALS2::SEZ6L	1.6	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3CC.06A	LIG1::AC008687.1	0.021	tier2	CDS-5UTR	A1 : B0	A1 : B0	NA
SKCM	TCGA.ER.A19J.06A	LMAN2::DOCK2	1.4	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
SKCM	TCGA.EE.A3AG.06A	LMBR1::KIAA0825	0.074	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A20I.06A	LMBRD2::CTNND2	0.46	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A8GN.06A	LNPEP::FLT4	2.7	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3CC.06A	LONP1::CARD8	0.17	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A4OY.01A	LONRF1::PSMB7	0.44	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.Z2.A8RT.06A	LRBA::TBC1D9	0.046	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.GF.A769.01A	LRP1::TMEM194A	3.0	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3MO.06A	LRP12::RALGPS1	0.93	tier1	CDS-5UTR	A1 : B0	A0 : B0	non-validated
SKCM	TCGA.EB.A57M.01A	LRP5::UVRAG	2.6	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1Z4.06A	LRRC68::APOC2	0.97	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1Z4.06A	LRRC68::CLPTM1	0.28	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FR.A7UA.06A	LRRC8D::PALMD	0.029	tier3	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.DA.A1IA.06A	LRRFIP1::DBF4B	0.47	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EE.A29V.06A	LRRFIP2::DEPTOR	0.35	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZJ.06A	LSAMP::COL4A5	0.11	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.YD.A9TA.06A	LSAMP::IGSF11	0.063	tier2	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A8GB.06A	LSM4::ADRBK1	0.14	tier1	Out-of-frame	A0 : B1	A0 : B1	NA
SKCM	TCGA.WE.A8ZM.06A	LUC7L2::IGSF22	0.4	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2J9.06A	LYRM4::FARS2	0.028	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MS.06A	LYST::NID1	0.81	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.D3.A1Q3.06A	LYST::SLC3A2	0.33	tier4	5UTR-CDS	A0 : B1	A0 : B1	NA
SKCM	TCGA.ER.A19T.06A	MACROD1::BAD	0.049	tier1	In-frame	A0 : B0	A0 : B0	validated
SKCM	TCGA.EE.A29D.06A	MACROD2::SPTLC3	0.056	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A17Z.06A	MAML2::YAP1	0.009	tier4	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2GR.06A	MAN1A2::PDE4DIP	0.22	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1Z4.06A	MAP3K8::LYZL2	1.1	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A44Q.06A	MAPK14::SIN3A	0.3	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.W3.AA1V.06B	MARCH3::OPCML	0.084	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A29D.06A	MARK1::RHOU	0.067	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A26D.06A	MARK2::BATF2	0.36	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.D3.A51G.06A	MBOAT1::F13A1	0.038	tier3	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A197.06A	MCAT::GTSE1	0.53	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A51N.06A	MCCC2::NNT	0.07	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A29H.06A	MCF2L2::DMRT1	0.11	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A2NF.01A	MED1::KRT222	2.0	tier1	In-frame	A1 : B0	A0 : B0	non-validated
SKCM	TCGA.ER.A2NF.06A	MED1::KRT222	2.0	tier1	In-frame	A1 : B0	A0 : B0	non-validated
SKCM	TCGA.EB.A1NK.01A	MED13L::METTL9	0.32	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3BZ.06A	MED13L::RP11-366K18.3	0.15	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A1Q3.06A	MED15::AHRR	0.19	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EE.A17Z.06A	MED15::BCL2L13	0.15	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A3EV.06A	MED25::ST8SIA6	0.077	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A24D.01A	MED27::TG	0.43	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
SKCM	TCGA.GN.A26A.06A	MEF2A::WDR61	0.27	tier1	5UTR-5UTR	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.XV.A9W2.01A	MEI1::MKL1	0.089	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZY.06A	MEIS1::ARHGAP25	1.2	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2GB.06A	METTL21B::PIP4K2C	3.5	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A3EV.06A	METTL5::MERTK	0.67	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2M7.06A	MGAT4B::ETF1	1.5	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.EE.A20F.06A	MGRN1::C16orf96	0.23	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A44R.06A	MICALL2::HDAC9	0.15	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.GF.A2C7.01A	MIER1::LEPR	0.039	tier4	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.GN.A265.06A	MIER2::SHC2	0.02	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.WE.A8ZX.06A	MIPOL1::SCFD1	0.6	tier1	In-frame	A0 : B1	A0 : B1	NA
SKCM	TCGA.D3.A2JG.06A	MITF::FOXP1	1.2	tier1	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2JG.06A	MITF::PRICKLE2	0.41	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A3Y6.01A	MKL1::ARAP1	0.076	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.XV.A9W2.01A	MKL1::CSNK1E	0.45	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A20I.06A	MKLN1::CDK14	0.17	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A20I.06A	MKLN1::GRM8	0.13	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19T.06A	MKLN1::NRF1	1.4	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.EB.A4XL.01A	MLL::ZDHHC7	2.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3C3.06A	MLL3::IRF5	0.003	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3C1.06A	MLL3::LHFPL3	0.16	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.BF.A1PV.01A	MLL3::XRCC2	0.53	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A3Y6.01A	MLL5::LHFPL3	0.79	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A44O.01A	MLLT1::ZNF439	1.5	tier2	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.RP.A695.06A	MLLT10::SLC16A1	0.23	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A42Z.01A	MPHOSPH6::PLXDC2	1.5	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FW.A3TU.06A	MPRIP::P4HA1	6.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3BZ.06A	MPRIP::TRAT1	1.2	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
SKCM	TCGA.YG.AA3P.06A	MRPL48::NARS2	0.6	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2GP.06A	MRS2::C6orf62	1.7	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A3XF.01A	MSRA::CSGALNACT1	0.26	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A8GJ.06A	MTMR3::EMID1	0.2	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A197.06A	MTMR3::MB	0.11	tier1	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A44R.06A	MTRR::FASTKD3	0.28	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.GF.A769.01A	MTSS1::WHSC1L1	0.96	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3CC.06A	MYH14::SIGLEC16	0.14	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2JC.06A	MYO10::C5orf38	1.4	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A44Q.06A	MYO10::FAM186A	0.68	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZG.06A	MYO10::SLC12A7	0.01	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
SKCM	TCGA.D9.A149.06A	MYO5A::DCBLD2	0.77	tier3	3UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3CC.06A	MYO9B::DOCK6	0.14	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
SKCM	TCGA.ER.A42L.06A	N4BP2L2::ZMYM5	0.33	tier4	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.DA.A1HW.06A	NAALADL2::VPS13C	0.68	tier2	NA	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.D9.A4Z5.01A	NAB1::STEAP3	0.19	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.D9.A3Z3.06A	NADSYN1::PPP6R3	0.041	tier1	In-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.WE.A8ZR.06A	NAV2::C11orf46	0.38	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.FS.A4F4.06A	NAV2::ERC1	1.1	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3CF.06A	NCOA1::ALK	0.47	tier2	Out-of-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.D3.A1Q6.06A	NCOA1::UBXN2A	0.13	tier3	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.GN.A26C.01A	NCOA2::ST18	0.15	tier1	NA	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.D3.A2J8.06A	NCOR2::S100A4	0.18	tier4	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2GJ.06A	NDST1::FAM114A2	0.03	tier1	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.HR.A2OH.01A	NDUFA10::ANXA4	0.38	tier3	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.HR.A2OH.06A	NDUFA10::ANXA4	0.38	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.FR.A726.01A	NEDD4L::IMMP2L	0.46	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A85J.01A	NEDD9::DTNBP1	1.1	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A3ET.06A	NEGR1::CYP2J2	0.39	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.EB.A44R.06A	NEK3::GXYLT2	1.3	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19H.06A	NELL1::C11orf75	1.6	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A3JI.06A	NES::UVRAG	0.82	tier3	3UTR-CDS	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.D3.A51E.06A	NFASC::CCNDBP1	0.072	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MH.06A	NFATC2::DOK5	0.043	tier2	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MH.06A	NFATC2::PHACTR3	0.73	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A4XL.01A	NFE2L1::SLC39A11	0.14	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A8GN.06A	NFX1::ELAVL2	0.18	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A20I.06A	NIPBL::BASP1	0.2	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A1Q3.06A	NIPBL::NUP155	0.87	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MJ.06A	NIPBL::SLC1A3	5.4	tier2	5UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A264.06A	NIPBL::SPEF2	0.64	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.WE.AAA3.06A	NKAIN3::TOX	0.29	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2M6.06A	NLGN1::SEMA5B	1.4	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19T.01A	NLGN4Y::CYorf15A	0.47	tier3	5UTR-5UTR	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.EE.A2M6.06A	NMNAT3::PLA1A	1.9	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3BZ.06A	NMNAT3::RP11-392O18.1	3.7	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A44Q.06A	NOS1::UBC	0.47	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.DA.A1IA.06A	NOTCH2NL::UCK2	0.25	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZJ.06A	NPHP3::LSAMP	0.027	tier1	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A20H.06A	NPHP4::CDKN2A	0.75	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19T.01A	NR6A1::GOLGA1	0.027	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.EE.A20I.06A	NRP2::PARD3B	0.56	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.3N.A9WC.06A	NRSN2::OSBPL1A	0.31	tier3	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A197.06A	NSA2::PCDHA3	0.9	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FW.A3I3.06A	NSF::NFE2L1	0.68	tier1	In-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.BF.A1Q0.01A	NSMCE1::IL4R	1.6	tier1	In-frame	A0 : B1	A1 : B0	NA
SKCM	TCGA.D9.A4Z5.01A	NTNG1::CALN1	0.46	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A1QB.06A	NUCKS1::RAB7L1	0.22	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.DA.A95V.06A	NUMA1::C2CD3	0.16	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A4U7.06A	NUMA1::YAP1	0.4	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.WE.A8ZX.06A	NUMB::TSHR	2.9	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.YD.A89C.06A	NUP153::MESP1	1.6	tier1	In-frame	A1 : B0	A1 : B0	NA
SKCM	TCGA.D3.A2J6.06A	NUP37::ACSS3	0.76	tier1	In-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.EE.A29C.06A	NUPL1::KL	1.1	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A5SE.01A	OBSCN::DISC1	0.004	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.YD.A89C.06A	OBSCN::KCNK2	0.88	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZQ.06A	OCA2::HERC2	0.012	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1Z4.06A	ODF2L::F8	0.53	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2GU.06A	ORC4::MAPK4	0.15	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A42Z.01A	OSBP2::MRPL43	0.094	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A3ET.06A	OTUB1::DLG2	1.8	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.EB.A44Q.06A	OXCT1::AC008810.1	0.61	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A1Q3.06A	OXCT1::GHR	1.9	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZZ.06A	OXSR1::ATXN7	0.34	tier1	In-frame	A1 : B1	A0 : B0	NA
SKCM	TCGA.FS.A4F4.06A	PACSIN2::CERK	0.15	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A3J4.06A	PACSIN2::EEFSEC	3.1	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A4F4.06A	PACSIN2::RAI14	0.59	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.YG.AA3O.06A	PAFAH1B1::ABR	3.9	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A197.06A	PAFAH1B1::CTDNEP1	0.002	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A26D.06A	PAK1::PDGFD	1.9	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A268.06A	PAK1IP1::MEP1A	0.64	tier1	In-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.EE.A2MS.06A	PARD3::FAM83B	0.68	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.FS.A4F9.06A	PARP11::PIK3C2G	0.76	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A5SE.01A	PBRM1::NEK4	1.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3C1.06A	PCBP2::HMGA2	0.25	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A20I.06A	PCDHGA6::JMJD1C	0.41	tier2	In-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.EE.A2MP.06A	PCGF5::RNLS	0.07	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MH.06A	PCMTD1::SLCO5A1	0.57	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.XV.AAZV.01A	PCMTD2::MYT1	2.7	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1Z4.06A	PDDC1::ALOX5AP	1.7	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.GF.A4EO.06A	PDE12::ROBO2	4.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A8LN.01A	PDE3B::PLCXD3	0.38	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.WE.A8ZM.06A	PDE3B::ZNF212	0.14	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2M7.06A	PDE4D::EFNA5	0.45	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZJ.06A	PDE8A::BNC1	0.19	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.DA.A1HW.06A	PDE8A::SLCO3A1	0.73	tier1	Out-of-frame	A1 : B0	A0 : B0	validated
SKCM	TCGA.ER.A197.06A	PDGFA::OCA2	0.006	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A4OY.01A	PDK3::NAV3	2.3	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A42L.06A	PDS5B::ATP8A2	0.06	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.DA.A1I8.06A	PDZD8::ENO4	0.18	tier1	In-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.W3.AA1R.06A	PELI2::GPHN	0.91	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A197.06A	PEMT::SCUBE1	0.14	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3CC.06A	PEPD::GRAMD1A	0.7	tier1	In-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.D3.A3MO.06A	PER2::HDAC4	0.048	tier2	In-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.D9.A1JX.06A	PEX26::C22orf28	0.093	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A196.01A	PFKFB3::ZNF831	0.43	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A82B.01A	PHF3::C6orf123	0.34	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.DA.A1I8.06A	PI4KA::CLTCL1	0.031	tier1	Out-of-frame	A0 : B1	A0 : B1	non-validated
SKCM	TCGA.FS.A1ZJ.06A	PIK3R4::KALRN	1.9	tier1	Out-of-frame	A1 : B1	A1 : B0	NA
SKCM	TCGA.FS.A4F4.06A	PLA2G6::TMEM184B	0.003	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A4IQ.01A	PLAT::C12orf66	0.074	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2M5.06A	PLAU::ZMAT2	100.0	tier3	3UTR-CDS	A0 : B1	A0 : B0	non-validated
SKCM	TCGA.D3.A3BZ.06A	PLBD2::FBXO21	0.43	tier2	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.ER.A197.06A	PLD5::PLA2R1	0.24	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A1Q5.06A	PLXDC2::THNSL1	0.41	tier3	CDS-5UTR	A1 : B0	A0 : B0	non-validated
SKCM	TCGA.WE.A8K1.06A	PLXNC1::CRADD	0.37	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A4U8.06A	PMP22::AC217773.1	0.1	tier1	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1Z0.06A	PNLDC1::KLHL32	0.006	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MG.06A	PNPLA6::ATP13A1	0.63	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.DA.A1HW.06A	POC1B::KRT78	100.0	tier3	Out-of-frame	A1 : B0	A0 : B0	non-validated
SKCM	TCGA.D3.A1Q9.06A	POFUT1::PRICKLE2	0.13	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A26A.06A	POGZ::HHIPL2	2.1	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.EE.A20C.06A	POLD3::ENC1	2.6	tier3	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A4F4.06A	POLDIP3::MED15	0.41	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A51N.06A	POLK::HSD17B4	0.17	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
SKCM	TCGA.D3.A3MU.06A	POLR2F::MXI1	0.9	tier3	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2JC.06A	POLR3H::CTNND2	0.86	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.BF.AAOX.01A	PPARA::BCL2L13	0.038	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A183.06A	PPAT::KIF16B	0.69	tier1	In-frame	A0 : B1	A1 : B0	NA
SKCM	TCGA.D3.A2J6.06A	PPFIA1::ANO1	0.9	tier1	In-frame	A1 : B1	A0 : B0	NA
SKCM	TCGA.BF.A9VF.01A	PPFIA1::NADSYN1	1.8	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FR.A7UA.06A	PPFIA1::SRD5A3	0.064	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.DA.A3F3.06A	PPFIA1::TSKU	0.66	tier1	CDS-5UTR	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.EB.A44Q.06A	PPFIA2::ACSS3	0.92	tier2	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.YD.A9TA.06A	PPIH::CCDC30	2.1	tier1	3UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A5KH.06A	PPIP5K2::PRODH	2.2	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A41B.01A	PPME1::UVRAG	0.003	tier1	3UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.W3.A825.06A	PPP1R10::MUS81	1.3	tier1	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A1Q4.06A	PPP1R12C::RPL28	0.46	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.W3.AA1V.06B	PPP2R2A::EIF3H	0.16	tier1	In-frame	A0 : B0	A1 : B0	NA
SKCM	TCGA.FS.A1ZD.06A	PPP6R2::TRABD	0.096	tier1	5UTR-5UTR	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.YG.AA3P.06A	PPP6R3::ACER3	0.39	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
SKCM	TCGA.FR.A3YO.06A	PPP6R3::EIF4G3	0.027	tier2	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.3N.A9WC.06A	PPPDE1::PGBD5	1.8	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.BF.A5EQ.01A	PRAME::ACO2	0.079	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.EB.A3Y6.01A	PRAME::HDLBP	0.18	tier3	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZS.06A	PRCP::DLG2	0.25	tier1	In-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.D3.A3BZ.06A	PRICKLE2::ADAMTS9	0.18	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MD.06A	PRKAA2::USP24	0.024	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A4XL.01A	PRKCA::PITPNC1	0.42	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
SKCM	TCGA.EB.A6L9.06A	PRKCE::GPR126	1.4	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.FS.A4F4.06A	PRMT3::C10orf112	0.44	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A551.01A	PRPF38A::ABCD3	0.028	tier2	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A264.06A	PRPF4B::F13A1	2.2	tier1	In-frame	A1 : B0	A0 : B0	non-validated
SKCM	TCGA.ER.A3ET.06A	PRR12::FDX1L	0.04	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A4F4.06A	PRR5::CSNK1E	0.019	tier2	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A44Q.06A	PSAP::ABCA1	3.7	tier4	3UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A5VU.01A	PSAP::ARFGEF2	0.9	tier2	3UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3CC.06A	PSAP::C3	0.043	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.FR.A8YE.06A	PSAP::C7	1.5	tier3	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A1Q4.06A	PSAP::IQCE	0.057	tier3	3UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19G.06A	PSAP::QKI	3.4	tier3	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A5UL.06A	PSAP::TCERG1	1.7	tier4	3UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.DA.A1HW.06A	PSMA1::SERGEF	1.0	tier2	Out-of-frame	A1 : B0	A0 : B0	validated
SKCM	TCGA.EE.A2MC.06A	PSMB7::PID1	0.33	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A3AD.06A	PTGIS::IFT52	0.12	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZK.06A	PTK2::TRAPPC9	0.79	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.EE.A3JI.06A	PTK2B::ICA1L	0.071	tier4	CDS-5UTR	A1 : B0	A1 : B0	non-validated
SKCM	TCGA.ER.A19T.01A	PTPN12::AC007000.1	0.4	tier1	In-frame	A1 : B0	A0 : B0	non-validated
SKCM	TCGA.EB.A82B.01A	PTPN12::BAI1	0.76	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19T.06A	PTPN23::ISY1	0.075	tier2	In-frame	A1 : B0	A1 : B0	non-validated
SKCM	TCGA.EB.A551.01A	PTPRF::C1orf222	0.11	tier1	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3C6.06A	PTPRG::FHIT	0.043	tier4	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A24D.01A	PTPRG::SYNPR	3.0	tier1	Out-of-frame	A1 : B0	A0 : B0	validated
SKCM	TCGA.EB.A5KH.06A	PTPRK::EYA4	0.03	tier1	In-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.EE.A2MS.06A	PTPRR::C12orf54	0.38	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2GU.06A	PTPRS::TMEM8A	0.079	tier1	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A20I.06A	PTPRZ1::DOCK4	0.67	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.FS.A4F4.06A	PTPRZ1::SRRM3	0.087	tier2	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A82C.01A	PUM1::HS2ST1	1.3	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
SKCM	TCGA.ER.A19T.01A	PXDNL::USP8	3.5	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.ER.A19T.06A	PXDNL::USP8	3.5	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.EB.A44Q.06A	R3HDM2::C6orf186	0.049	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A26D.06A	R3HDM2::PPM1H	0.074	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A44Q.06A	R3HDM2::USP15	0.74	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
SKCM	TCGA.FS.A4F4.06A	RAB18::C11orf41	1.2	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A8GB.06A	RAB30::DLG2	0.002	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A82C.01A	RABGAP1::PBX3	0.52	tier2	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2ML.06A	RABGAP1L::DARS2	0.85	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A82C.01A	RAD1::SPEF2	1.2	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.OD.A75X.06A	RAD51B::IFT43	0.94	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2GR.06A	RAD9A::CLPB	0.07	tier2	In-frame	A1 : B1	A0 : B0	NA
SKCM	TCGA.EE.A2MI.06A	RAF1::TRAK1	2.2	tier1	In-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.XV.AAZY.01A	RAI1::C5orf25	0.98	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A17Y.06A	RAI1::NOS2	0.33	tier3	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A8LN.01A	RAI14::C5orf34	0.45	tier3	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.D3.A1Q3.06A	RAI14::MAPK9	0.072	tier1	In-frame	A1 : B1	A0 : B0	NA
SKCM	TCGA.FS.A1ZE.06A	RALGAPB::DSN1	0.22	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.ER.A3ET.06A	RALY::PAK7	0.088	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A197.06A	RAP1B::SNUPN	100.0	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.WE.A8ZR.06A	RAPGEF1::ZMYND19	0.008	tier3	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2M7.06A	RAPGEF5::ISPD	0.13	tier3	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2JN.06A	RAPGEF5::STEAP1B	0.1	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.GF.A6C9.06A	RARB::OSBPL10	0.02	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.BF.AAP4.01A	RASAL2::KIF14	0.067	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.GN.A26D.06A	RASSF3::ITGA7	1.9	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FW.A5DX.01A	RB1::MED4	0.029	tier2	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MH.06A	RB1CC1::SNX16	0.23	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZK.06A	RBFOX2::MKL1	0.092	tier1	CDS-5UTR	A0 : B0	A0 : B0	validated
SKCM	TCGA.D3.A3CF.06A	RBKS::AC008073.6	0.33	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3BZ.06A	RBM19::PTPRQ	0.33	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.YG.AA3P.06A	RBM38::CAPN5	0.37	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2GU.06A	RBMS1::ORC4	0.47	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.DA.A3F3.06A	RECK::ACER3	0.03	tier1	In-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.D9.A4Z3.01A	REV3L::FYN	0.4	tier3	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.ER.A197.06A	RFX3::ARID4B	0.17	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.BF.A1Q0.01A	RGL1::HMCN1	0.27	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3CC.06A	RGS17::LAMA2	2.0	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A82B.01A	RGS20::MCPH1	0.24	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A184.06A	RICTOR::LHFP	0.017	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.D3.A1Q1.06A	RIMKLB::ELP3	0.21	tier1	In-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.DA.A95Y.06A	RNASEH1::DYSF	0.13	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A26A.06A	RNF115::PRPF3	0.088	tier4	CDS-5UTR	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.D9.A3Z3.06A	RNF121::MRPL21	1.4	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZJ.06A	RNF130::HRH2	0.007	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.DA.A95Y.06A	RNF144A::MSH2	0.74	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A3EV.06A	RNF144B::KDM1B	0.82	tier1	In-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.EE.A2M7.06A	RNF145::PDE4D	3.7	tier1	In-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.FS.A1ZK.06A	RNF157::CA10	0.17	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.XV.AAZV.01A	RNF213::TBCD	0.24	tier1	In-frame	A1 : B0	A0 : B1	NA
SKCM	TCGA.XV.AAZV.01A	RNF34::WDFY2	0.12	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2A0.06A	RNGTT::AHI1	0.94	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.ER.A3EV.06A	ROBO1::HMCN1	0.033	tier1	In-frame	A1 : B1	A0 : B0	NA
SKCM	TCGA.EB.A4IQ.01A	ROBO1::SEMA5B	1.3	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D9.A6EC.06A	ROBO1::THAP4	0.18	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.YD.A9TA.06A	ROCK1::MAP1B	0.23	tier1	In-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.EB.A82C.01A	ROD1::SVEP1	0.26	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A2NG.06A	ROR1::IL12RB2	0.24	tier2	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2M7.06A	RP11-1220K2.2::TTC26	0.007	tier1	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MH.06A	RP11-383H13.1::PHACTR3	0.51	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2GL.06A	RP2::CHST7	0.31	tier1	CDS-3UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3C1.06A	RPF1::PRKACB	0.22	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MG.06A	RPL18::FAR1	0.8	tier4	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.D9.A4Z6.01A	RPL18::SLC38A5	0.36	tier3	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.D9.A4Z6.06A	RPL18::SLC38A5	0.36	tier3	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.D9.A4Z3.01A	RPL18::ZNF827	3.6	tier2	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A262.06A	RPL37A::DDX27	3.6	tier3	NA	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.EE.A29Q.06A	RPL8::FMN1	5.5	tier4	3UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MT.06A	RPL8::GLG1	0.098	tier3	3UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A4P0.01A	RPP14::ABHD6	1.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A82B.01A	RPS6KA4::C11orf20	1.2	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2JA.06A	RPS6KA5::BMP4	0.082	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19H.06A	RPS6KB1::VMP1	1.4	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.W3.AA21.06A	RPS6KB1::VMP1	1.4	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A5SE.01A	RSBN1L::HGF	0.054	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZT.06A	RSF1::ARRB1	0.39	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A57M.01A	RSF1::INTS4	0.37	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
SKCM	TCGA.YG.AA3P.06A	RSF1::NARS2	0.3	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
SKCM	TCGA.GN.A26D.06A	RSF1::TRPC6	0.55	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
SKCM	TCGA.DA.A3F5.06A	RUNX1::IFNAR1	0.46	tier4	Out-of-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.EE.A2ML.06A	RXRG::FAM78B	0.4	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.DA.A1I1.06A	S100A4::ELK3	0.31	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A263.01A	S100B::TCTN1	100.0	tier3	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2JN.06A	SAFB2::AP2A1	1.4	tier3	Out-of-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.FS.A1ZK.06A	SBF1::ODZ4	0.26	tier1	Out-of-frame	A1 : B0	A0 : B0	non-validated
SKCM	TCGA.EE.A2GR.06A	SBF2::CNTN5	0.14	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A268.06A	SBF2::MRGPRX3	0.003	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A5SH.06A	SBNO2::RAP1GAP	0.05	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A3ET.06A	SCAMP2::PLAUR	0.5	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A29D.06A	SCAPER::TSPAN3	0.75	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2M8.06A	SCP2::STXBP3	0.35	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19T.01A	SCYL2::ANKS1B	0.8	tier1	NA	A0 : B0	A0 : B0	validated
SKCM	TCGA.EE.A20F.06A	SCYL3::CLPTM1L	1.1	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2GP.06A	SDC3::CHD1	1.4	tier4	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A29E.06A	SDCBP::BIRC6	0.58	tier4	3UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19H.06A	SDCBP::ESF1	0.034	tier4	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A197.06A	SDCCAG8::TFB2M	0.59	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.DA.A1HW.06A	SEC11A::VPS33B	100.0	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
SKCM	TCGA.FS.A1ZZ.06A	SEC22C::MRPS28	2.2	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A1Q4.06A	SEMA3C::PPP1R12C	0.15	tier1	In-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.FS.A1ZB.06A	SEMA3E::TSGA14	0.25	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A5KH.06A	SEMA5A::RBFOX2	0.24	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.DA.A1HW.06A	SERGEF::KCNC1	0.38	tier2	In-frame	A0 : B0	A0 : B0	validated
SKCM	TCGA.FW.A3I3.06A	SERINC5::MYO10	1.9	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MK.06A	SERPING1::CHD1	1.6	tier4	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.W3.A825.06A	SETD7::NPY5R	0.84	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19M.06A	SFMBT1::PTPRG	1.4	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3BZ.06A	SGK3::NCK1	0.36	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A8LN.01A	SGSM3::DEFB126	100.0	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2GL.06A	SH3BGRL3::GRINA	0.033	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZD.06A	SH3D19::INPP4B	0.48	tier1	5UTR-5UTR	A0 : B0	A0 : B0	validated
SKCM	TCGA.EE.A2MS.06A	SH3KBP1::VSIG1	0.56	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.GN.A8LN.01A	SHANK3::MIOX	0.42	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.QB.AA9O.06A	SHC1::ANAPC5	0.31	tier1	5UTR-CDS	A0 : B1	A0 : B1	NA
SKCM	TCGA.D3.A2JA.06A	SHC2::PTEN	0.019	tier4	Out-of-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.ER.A19T.01A	SHC2::RNF126	1.8	tier1	In-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.BF.A9VF.01A	SIAH1::FAM65A	0.14	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZK.06A	SIPA1L3::CEP89	0.74	tier2	In-frame	A0 : B0	A0 : B0	validated
SKCM	TCGA.EB.A4XL.01A	SKAP1::CALCOCO2	0.017	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.D9.A4Z2.01A	SKI::CA6	0.021	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.Z2.AA3S.06A	SLC16A5::KCTD2	0.94	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A44Q.06A	SLC16A7::GOLPH3	0.13	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.YD.A89C.06A	SLC22A23::LRRC49	2.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.W3.AA1V.06B	SLC25A16::DRGX	0.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.WE.A8ZX.06A	SLC25A21::RP11-944C7.1	0.04	tier1	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.BF.A1Q0.01A	SLC25A3::DDX27	100.0	tier3	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A3J7.06A	SLC25A36::CLSTN2	2.8	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19H.06A	SLC25A42::SMARCA4	0.65	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3CC.06A	SLC27A1::SUV420H2	0.083	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.WE.A8ZX.06A	SLC2A13::FAM186A	0.59	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D9.A4Z3.01A	SLC35F2::PIWIL4	4.6	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19W.06A	SLC38A10::NPLOC4	0.83	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.WE.A8K6.06A	SLC39A11::FAM104A	3.4	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.DA.A1I0.06A	SLC39A3::DDX39A	0.17	tier1	In-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.FS.A1ZK.06A	SLC3A2::GRAP2	4.0	tier4	In-frame	A0 : B0	A0 : B0	validated
SKCM	TCGA.EB.A82C.01A	SLC6A17::DPYD	1.0	tier2	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A197.06A	SLC9A2::C2orf55	0.75	tier2	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19T.01A	SMAP1::FAR2	0.071	tier2	CDS-5UTR	A0 : B0	A0 : B0	validated
SKCM	TCGA.EB.A5SH.06A	SMAP2::NLRX1	0.43	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.D9.A4Z5.01A	SMARCA2::AC074212.3	0.36	tier1	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.WE.A8ZM.06A	SMARCC1::CDC25A	0.02	tier2	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZK.06A	SMARCD2::NUFIP2	1.1	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.ER.A19E.06A	SMC2::AKNA	0.45	tier3	In-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.EE.A29L.06A	SMURF2::UBAC2	1.2	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2JB.06A	SMYD2::LPGAT1	0.46	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A51G.06A	SMYD3::RP11-439E19.8	100.0	tier1	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.DA.A1I7.06A	SMYD3::ZMYM4	1.3	tier1	In-frame	A0 : B1	A0 : B1	NA
SKCM	TCGA.Z2.AA3S.06A	SNRK::SUCLG2	0.12	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19P.06A	SNRNP70::ZNFX1	0.83	tier4	3UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3CF.06A	SNTG2::RBKS	100.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A57M.01A	SNX1::SCG5	1.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A29X.06A	SNX29::HS3ST4	0.066	tier2	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.D3.A1Q9.06A	SNX32::PLCB3	0.026	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19L.06A	SNX5::PCSK2	4.7	tier1	In-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.D9.A4Z5.01A	SOS2::NRXN3	3.4	tier3	Out-of-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.ER.A19N.06A	SPAG9::RDX	0.38	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A551.01A	SPATA6::CRYZ	0.41	tier2	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A5KH.06A	SPECC1L::MED15	2.8	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.YG.AA3O.06A	SPG7::KIAA0182	0.82	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A51N.06A	SPINK5::DNAJC21	0.066	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2GB.06A	SPIRE1::PSMG2	0.097	tier1	In-frame	A1 : B0	A0 : B1	NA
SKCM	TCGA.ER.A1A1.06A	SPRED1::GANC	0.027	tier4	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A24D.01A	SPTAN1::MAPKAP1	0.99	tier1	Out-of-frame	A0 : B1	A0 : B0	non-validated
SKCM	TCGA.EE.A2GU.06A	SPTBN1::MFN1	0.14	tier4	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2JA.06A	SPTBN1::STX8	1.1	tier1	In-frame	A1 : B0	A1 : B0	NA
SKCM	TCGA.YG.AA3P.06A	SPTBN2::ARHGEF17	0.054	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A6L9.06A	SRBD1::AC013480.1	0.49	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A6L9.06A	SRBD1::ATL2	0.38	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A51N.06A	SREK1IP1::CCDC112	0.034	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.BF.A5EQ.01A	SSBP2::LGALS2	0.015	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MI.06A	SSH2::C10orf54	0.011	tier1	Out-of-frame	A1 : B0	A0 : B0	non-validated
SKCM	TCGA.W3.AA1V.06B	ST5::DENND5A	0.23	tier1	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A193.06A	ST8SIA1::AEBP2	0.94	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3BZ.06A	STAG1::P2RY13	0.6	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A3Y6.01A	STARD10::CLTCL1	1.3	tier2	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MH.06A	STAU2::OSBPL2	0.57	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A29D.06A	STIM1::PGAP2	0.41	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.GN.A8LK.06A	STIM1::PNPLA2	0.029	tier1	In-frame	A1 : B1	A0 : B0	NA
SKCM	TCGA.BF.AAP7.01A	STK24::BRP44	1.2	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EB.A51B.01A	STK32C::PWWP2B	0.056	tier4	CDS-3UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.Z2.AA3V.06A	STK32C::PWWP2B	0.056	tier4	5UTR-3UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A5SH.06A	STX12::USP48	1.8	tier2	Out-of-frame	A0 : B0	A0 : B1	NA
SKCM	TCGA.EB.A44R.06A	SUB1::ELMO1	0.5	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A4F4.06A	SULT4A1::TFIP11	3.8	tier1	In-frame	A0 : B1	A0 : B1	NA
SKCM	TCGA.D3.A5GU.06A	SUZ12::VANGL1	0.033	tier2	In-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.BF.AAP1.01A	SYT14::HSD11B1	0.91	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19C.06A	TAB1::PHF21B	0.12	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A8GR.06A	TACC3::TMEM129	0.023	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FW.A3TV.06A	TAF3::SVIL	0.11	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.D3.A1Q1.06A	TAF8::GRIP1	0.36	tier2	Out-of-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.EE.A2MR.06A	TAOK1::ASGR2	2.9	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2GR.06A	TATDN2::IRAK2	0.19	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2JC.06A	TAX1BP1::BRAF	0.89	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZJ.06A	TBC1D1::LIMCH1	5.2	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZK.06A	TBC1D16::KIF3A	0.078	tier2	NA	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.EE.A2ME.06A	TBC1D22A::ARFGAP3	4.7	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.BF.A5EQ.01A	TBC1D22A::BACH2	0.35	tier2	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.BF.A5EQ.01A	TBC1D22A::OTUD7A	0.69	tier3	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A4F4.06A	TBC1D22A::RP11-661C8.3	0.055	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A197.06A	TBC1D22A::SMYD3	0.72	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A4F4.06A	TBC1D22A::SREBF2	0.22	tier1	In-frame	A0 : B1	A0 : B1	NA
SKCM	TCGA.GN.A26D.06A	TBK1::GRIP1	0.6	tier1	Out-of-frame	A0 : B1	A1 : B0	NA
SKCM	TCGA.D3.A8GJ.06A	TBX15::AP4B1	0.1	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A5GR.06A	TDRD3::CUL4A	1.4	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZJ.06A	TEAD1::FAR1	0.046	tier2	5UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.YG.AA3O.06A	TERF2IP::CKLF	0.32	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.YG.AA3O.06A	TERF2IP::CMTM1	0.28	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A26D.06A	TESK2::KNCN	0.39	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A1QA.06A	TEX2::CLASP2	0.38	tier4	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZH.06A	TGFBI::RABEP1	0.15	tier4	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A82C.01A	TGFBR3::NRD1	0.26	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2GE.06A	TGM2::ACVRL1	0.17	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A42H.01A	THAP1::SFRP1	0.34	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MK.06A	TIMP1::EIF2AK2	0.5	tier4	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A26C.01A	TIMP3::ZNFX1	0.099	tier3	3UTR-CDS	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.ER.A197.06A	TJP1::SLC20A1	0.96	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
SKCM	TCGA.FS.A1ZK.06A	TJP2::RPRD2	0.008	tier2	In-frame	A1 : B1	A0 : B0	validated
SKCM	TCGA.BF.A5EO.01A	TMCO7::CDH1	2.9	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.GF.A6C8.06A	TMCO7::CFDP1	2.6	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19T.01A	TMEM106A::NMT1	0.14	tier4	Out-of-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.EE.A20I.06A	TMEM117::COL25A1	0.076	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A197.06A	TMEM117::DYNC1LI2	0.44	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A51H.06A	TMEM117::KCNC2	0.55	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MS.06A	TMEM117::MCRS1	2.3	tier1	In-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.D3.A51N.06A	TMEM161B::CTNND2	6.2	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A5KH.06A	TMEM167A::ABLIM3	2.6	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A5KH.06A	TMEM167A::PAM	0.26	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D9.A3Z3.06A	TMSB10::SNW1	0.45	tier4	3UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A29D.06A	TMTC3::EIF4B	0.088	tier1	In-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.GN.A265.06A	TMX1::TRIM9	1.6	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2JN.06A	TNFRSF1A::CHD4	0.043	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2M6.06A	TNIK::STXBP5L	0.016	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2GO.06A	TNPO2::ELK3	0.78	tier4	3UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.DA.A1I0.06A	TNPO2::NFIX	0.025	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.FR.A729.06A	TNRC18::DGKB	0.75	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.DA.A1HW.06A	TNRC18::HDAC9	0.14	tier1	CDS-5UTR	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.FS.A1ZY.06A	TNRC18::TSGA13	0.063	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.BF.A5EQ.01A	TNRC6B::ATXN10	0.62	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A266.06A	TNRC6B::FAM83F	0.39	tier3	5UTR-CDS	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.ER.A19H.06A	TNS3::PKD1L1	0.71	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A5KH.06A	TOB2::MPPED1	0.13	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2GU.06A	TP53::CHD3	0.69	tier1	5UTR-CDS	A0 : B1	A0 : B1	NA
SKCM	TCGA.EE.A2MI.06A	TRAK1::RAF1	2.2	tier1	In-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.D9.A1X3.01A	TRHDE::NUP107	2.6	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D9.A1X3.06A	TRHDE::NUP107	2.6	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1Z4.06A	TRIM2::ARFIP1	0.002	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
SKCM	TCGA.FW.A3R5.06A	TRIM2::LRBA	0.2	tier1	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZN.01A	TRIM26::TJAP1	1.4	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2JB.06A	TRIM48::ADAMTS16	0.021	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A44Q.06A	TRIO::ADAMTS12	0.082	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.EB.A44Q.06A	TRIO::CLIC5	1.1	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D9.A1X3.01A	TRIO::CLNK	0.18	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D9.A1X3.06A	TRIO::CLNK	0.18	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A44Q.06A	TRIO::LIFR	0.094	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.FS.A4F4.06A	TRIO::SLC9A3	1.0	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2JC.06A	TRIP12::MAFF	2.0	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A26D.06A	TSFM::HMGA2	2.2	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZQ.06A	TSPAN10::SQSTM1	0.2	tier3	3UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A29V.06A	TSPAN9::KLRG1	0.71	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A2NE.06A	TSPAN9::SLC2A13	3.8	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A4F4.06A	TSPO::CDH18	100.0	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A431.01A	TTLL1::KIF1B	2.2	tier3	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.Z2.AA3V.06A	TTYH3::ASPSCR1	0.008	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.Z2.AA3V.06A	TTYH3::C7orf50	0.002	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A29C.06A	TTYH3::DDX27	0.037	tier4	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.3N.A9WD.06A	TTYH3::MAD1L1	0.15	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1YW.06A	TTYH3::MAD1L1	0.15	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.Z2.AA3V.06A	TTYH3::MAD1L1	0.15	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A3Y7.01A	TTYH3::NOC4L	0.08	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A2NE.06A	TXNDC17::YBX2	0.44	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A57M.01A	TYR::MMP20	0.6	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19T.01A	UBAC1::SHANK2	0.17	tier1	NA	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.ER.A19T.06A	UBAC1::SHANK2	0.17	tier1	NA	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.FS.A1ZM.06A	UBAC2::SARM1	0.63	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.FR.A3YO.06A	UBASH3B::GRIK4	1.3	tier1	Out-of-frame	A0 : B0	A1 : B0	NA
SKCM	TCGA.WE.AA9Y.06A	UBE2E1::RAB14	0.77	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.D9.A4Z5.01A	UBE2E3::TECPR2	0.029	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.RP.A693.06A	UBE2G2::SON	3.4	tier3	In-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.EE.A180.06A	UBE2Q1::MYO7A	0.85	tier1	In-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.FS.A1ZJ.06A	UBL3::SUCLA2	0.002	tier1	In-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.EB.A42Z.01A	UBN1::BLNK	0.11	tier3	Out-of-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.D9.A4Z3.01A	UBR5::RIMS4	0.16	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1Z4.06A	UBTD2::C5orf58	0.25	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.WE.A8ZM.06A	UNC45A::RALGAPB	0.029	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19C.06A	UPP1::NCALD	3.2	tier4	3UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.LH.A9QB.06A	UQCC::RBM39	0.37	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.D3.A1Q1.06A	USP10::ATP2C2	0.42	tier1	Out-of-frame	A1 : B1	A0 : B0	validated
SKCM	TCGA.D3.A51G.06A	USP13::KCNMB2	0.22	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A5GN.06A	USP18::YWHAH	1.7	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A2ND.06A	USP33::CCDC53	1.8	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.YG.AA3P.06A	USP35::CHRDL2	0.97	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2GP.06A	USP39::REEP1	1.0	tier3	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A82C.01A	USP47::RRAS2	0.19	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2M5.06A	USP53::MYOZ2	0.16	tier3	5UTR-CDS	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.BF.A5EQ.01A	USP8::BDP1	0.054	tier2	Out-of-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.D3.A3CC.06A	USP9X::RBBP7	0.06	tier1	5UTR-CDS	A0 : B1	A0 : B1	NA
SKCM	TCGA.BF.A1Q0.01A	UTP20::ANKS1B	0.36	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A196.01A	VAC14::CDH8	0.16	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MH.06A	VAPB::PKIA	0.028	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19W.06A	VAT1::BCAS3	1.2	tier3	NA	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MU.06A	VAT1::COL5A1	0.006	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A2NE.06A	VAT1::CTNND1	0.64	tier1	3UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2A1.06A	VAV2::RXRA	0.44	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
SKCM	TCGA.D3.A2J6.06A	VGF::SIAE	1.8	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3C1.06A	VGF::SIAE	1.8	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A4IS.01A	VIM::LAMA4	0.5	tier3	3UTR-CDS	A0 : B1	A0 : B0	NA
SKCM	TCGA.EE.A2GT.06A	VIM::LAMA4	0.5	tier3	3UTR-CDS	A0 : B1	A0 : B0	non-validated
SKCM	TCGA.D3.A2JO.06A	VIM::PEX1	1.2	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.BF.A1PV.01A	VIM::PLEKHA5	6.0	tier4	3UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MF.06A	VIM::SGK3	1.1	tier3	3UTR-CDS	A0 : B1	A0 : B0	NA
SKCM	TCGA.FS.A1ZE.06A	VPS13D::TNFRSF1B	2.1	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A3JI.06A	VPS24::BIRC6	1.8	tier4	5UTR-CDS	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.D3.A5GS.06A	WARS2::NTNG1	0.47	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19W.06A	WASF2::FGR	0.55	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.FR.A7U8.06A	WDHD1::DLGAP5	0.052	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MN.06A	WDR59::CDH11	2.5	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MN.06A	WDR59::KIFC3	0.35	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A1Q3.06A	WDR70::AGXT2	0.25	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.FS.A4F4.06A	WDR70::GRAMD4	0.48	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A85J.01A	WRNIP1::SERPINB6	1.2	tier4	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A1Q4.06A	WWP1::ESRP1	0.052	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MH.06A	WWP1::ZNF704	0.2	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A196.01A	WWP2::ZNF629	0.98	tier2	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.WE.AAA4.06A	WWTR1::ESRRG	0.99	tier3	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZD.06A	XPR1::NCF2	0.22	tier1	Out-of-frame	A1 : B1	A0 : B0	validated
SKCM	TCGA.XV.AAZY.01A	XRCC6::ARSB	1.8	tier1	In-frame	A1 : B0	A1 : B0	NA
SKCM	TCGA.ER.A19F.06A	XRN1::RUVBL1	0.22	tier1	In-frame	A0 : B1	A0 : B1	NA
SKCM	TCGA.D3.A8GB.06A	XRRA1::C11orf30	0.11	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A4F4.06A	XYLT1::HS3ST4	0.14	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A17Z.06A	YAP1::MAML2	0.032	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A82B.01A	YAP1::MRPL48	0.11	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MH.06A	YTHDF1::RP11-1102P16.1	0.73	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.D9.A149.06A	YWHAG::OPA3	0.007	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
SKCM	TCGA.FS.A1ZK.06A	ZBED4::RANGAP1	0.23	tier2	5UTR-CDS	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.XV.AAZW.01A	ZBTB20::C12orf41	1.3	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A3J4.06A	ZBTB20::LSAMP	0.81	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1ZJ.06A	ZBTB20::LSAMP	0.81	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A57M.01A	ZC3H15::GULP1	0.56	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.FS.A4F4.06A	ZC3H7B::GRAMD4	0.006	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.XV.AAZY.01A	ZC3H7B::MICALL1	0.082	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.BF.AAP8.01A	ZCCHC8::RSRC2	0.36	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.D9.A6E9.06A	ZCRB1::LIMA1	0.021	tier1	In-frame	A1 : B1	A0 : B0	NA
SKCM	TCGA.D3.A1Q3.06A	ZDHHC11::TPST2	2.5	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A2MS.06A	ZDHHC17::GLIPR1L1	0.21	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.DA.A3F3.06A	ZDHHC21::PHGDH	1.9	tier1	In-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.FS.A1ZZ.06A	ZDHHC3::ATXN7	0.84	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A4XL.01A	ZDHHC7::USP10	0.034	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A26D.06A	ZDHHC9::SLCO1A2	1.3	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.ER.A197.06A	ZEB2::AKT3	0.14	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.ER.A3EV.06A	ZFAND2A::PHF14	0.042	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.EE.A29L.06A	ZFAND3::RPTOR	0.068	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2J6.06A	ZFAND6::KCNRG	100.0	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.GF.A769.01A	ZMAT3::TP63	1.6	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
SKCM	TCGA.ER.A3EV.06A	ZMIZ1::BTD	0.16	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3C7.06A	ZMIZ1::XYLT2	0.022	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.DA.A1I7.06A	ZMYM4::SMYD3	1.3	tier1	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.ER.A3ET.06A	ZNF134::RYR1	0.046	tier4	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.DA.A1I0.06A	ZNF136::XAB2	0.99	tier1	In-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.WE.A8ZM.06A	ZNF212::PDE3B	0.14	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.BF.A5EQ.01A	ZNF253::SLC1A6	0.042	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D9.A1JX.06A	ZNF280B::BPIFC	0.43	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3CC.06A	ZNF283::DPRX	100.0	tier4	In-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.FW.A3R5.06A	ZNF420::SPINT2	0.66	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
SKCM	TCGA.GN.A8LL.06A	ZNF429::C2CD3	2.1	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A3CC.06A	ZNF45::KIAA0355	0.93	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A1YY.06A	ZNF507::BCL2L13	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2JE.06A	ZNF544::GRIN2D	7.8	tier1	5UTR-CDS	A0 : B0	A0 : B1	NA
SKCM	TCGA.DA.A1I0.06A	ZNF57::NANOS3	0.067	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.FS.A1ZK.06A	ZNF587::APOM	1.0	tier3	In-frame	A0 : B0	A0 : B0	non-validated
SKCM	TCGA.ER.A19M.06A	ZNF667::ZNF837	3.9	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19T.01A	ZNF704::IMPA1	0.4	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
SKCM	TCGA.EB.A551.01A	ZNF786::FAM116B	0.78	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
SKCM	TCGA.ER.A19L.06A	ZNF79::SLC2A8	1.9	tier1	Out-of-frame	A1 : B0	A0 : B0	non-validated
SKCM	TCGA.ER.A1A1.06A	ZNF791::MLL5	0.33	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.EB.A42Z.01A	ZNRF3::XBP1	0.037	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.D3.A2JE.06A	ZSCAN5A::DKKL1	0.24	tier1	In-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.YG.AA3P.06A	ZSWIM3::PTPRT	0.36	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
SKCM	TCGA.FS.A4FC.06A	ZSWIM6::NDUFAF2	0.48	tier1	In-frame	A0 : B0	A0 : B0	NA